Synchronisation properties of multi-oscillator circadian systems: Biological functions beyond time-keeping. Universidade Nova de Lisboa (2014) pp.162.
The evolution of function in the Rab family of small GTPases. Universidade Nova de Lisboa (2014) pp.223.
The Role of Metabolism and Ecology in the Emergence of Microbial Communities. University of Edinburgh (2014) pp.156.
The Drosophila melanogaster network landscape. Prediction and analysis of transcriptional regulatory and protein-protein interaction networks. Instituto de Tecnologia Quimica e Biologica. Universidade Nova de Lisboa (2014) pp.165.
Uncertainty, generalization, and neural representation of relevant variables for decision making. Universidade Nova de Lisboa (2013) pp.174.
Cranial Form Evolution and Functional Adaptations to Diet among Papionins: A Comparative Study combining Quantitative Genetics, Geometric Morphometrics and Finite Element Analysis. HYMS University of York (2013) pp.317.
Probabilistic modeling of metabolic network evolution. Imperial College London (2013) pp..
Social evolution in class-structured populations. University of Oxford (2013) pp.359.
Unifying the Epidemiological, Ecological and Evolutionary Dynamics of Dengue. University of Oxford (2013) pp.232.
Mathematical modelling of signal sensing and transduction: revisiting classical mechanisms. The University of Edinburgh (2013) pp.178.
Social evolution and sex allocation theory. University of Oxford (2012) pp.255.
Modeling of plasmid dynamics and persistence in a community of hosts. University of Birmingham, UK (2012) pp.290.
Mathematical models for exploring insecticide resistance in vector mosquitoes. University of Liverpool, UK (2012) pp.111.
Stem cell fate regulation: computational modeling in the hematopoietic system. University of Lund, Sweden (2012) pp.230.
Searching without information: a quantitative analysis of Caenorhabditis elegans locomotion. Universidade de Lisboa (2012) pp.182.
Evolutionary analysis of animal microRNAs. University of Cambridge, UK (2012) pp.183. [pdf]
A neural circuit model of the oculomotor integrator: theory for optogenetic dissection . Ecole Normale Superieure, Paris, France (2012) pp..
Integrative approaches for systematic reconstruction of regulatory circuits in mammals . Massachusetts Institute of Technology (2012) pp..
An entropy-based investigation of underpinnings and impact of oscillations in a model of PD. University College London (2012) pp.169.
Mathematical Modelling of Mitotic Exit Control in Budding Yeast Cell Cycle. University of Oxford (2012) pp.248. [pdf]
Interplay between polycomb repression and RNA polymerase II regulation genome-wide in murine ES cells. Imperial College London (2012) pp.281. [pdf]
Development of Evolutionary Models for Non-Coding RNAs. Université de Strasbourg (2011) pp.196. [pdf]
Efficient algorithms for the identification of miRNA motifs in DNA sequences. Universidade Técnica de Lisboa, Portugal & Université Claude Bernard, Lyon, France (2011) pp.110. [pdf]
Computational approaches to uncovering regulatory roles of sRNA in animals. University of East Anglia, UK (2011) pp.171. [pdf]
Reverse engineering the mechanisms and dynamical behaivor of complex biochemical pathways. School of Informatics and Computing. Indiana University (2011) pp.129. [pdf]
Metabolic Pathway Analysis: from small to genome-scale networks. University of Jena (2011) pp.144. [pdf]
Genomic imprints of ecological adaptation in Bacteria and Archaea. Université Pierre et Marie Curie - Paris 6 (2010) pp..
Computational design with flexible backbone sampling for protein remodeling and scaffolding of complex binding sites. Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa (2010) pp.162. [pdf]
Towards an integrative approach for the modeling and formal verification of biological regulatory networks. Université Claude Bernard, Lyon 1, and Instituto Superior Técnico, Universidade Técnica de Lisboa (2010) pp.141. [pdf]