Offering in-depth research training in one area of computational biology chosen by each student.

Theses

Daniel Damineli

Synchronisation properties of multi-oscillator circadian systems: Biological functions beyond time-keeping. Universidade Nova de Lisboa (2014) pp.162.

Yoan Diekmann

The evolution of function in the Rab family of small GTPases. Universidade Nova de Lisboa (2014) pp.223.

Sylvie Estrela

The Role of Metabolism and Ecology in the Emergence of Microbial Communities. University of Edinburgh (2014) pp.156.

Rogério Candeias

The Drosophila melanogaster network landscape. Prediction and analysis of transcriptional regulatory and protein-protein interaction networks. Instituto de Tecnologia Quimica e Biologica. Universidade Nova de Lisboa (2014) pp.165.

Hugo Liberal Fernandes

Uncertainty, generalization, and neural representation of relevant variables for decision making. Universidade Nova de Lisboa (2013) pp.174.

Miguel Prôa

Cranial Form Evolution and Functional Adaptations to Diet among Papionins: A Comparative Study combining Quantitative Genetics, Geometric Morphometrics and Finite Element Analysis. HYMS University of York (2013) pp.317.

Rodrigo Liberal Fernandes

Probabilistic modeling of metabolic network evolution. Imperial College London (2013) pp..

António MM Rodrigues

Social evolution in class-structured populations. University of Oxford (2013) pp.359.

José Lourenço

Unifying the Epidemiological, Ecological and Evolutionary Dynamics of Dengue. University of Oxford (2013) pp.232.

Bruno Miguel Cardoso Martins

Mathematical modelling of signal sensing and transduction: revisiting classical mechanisms. The University of Edinburgh (2013) pp.178.

João Alpedrinha

Social evolution and sex allocation theory. University of Oxford (2012) pp.255.

Sónia Martins

Modeling of plasmid dynamics and persistence in a community of hosts. University of Birmingham, UK (2012) pp.290.

Susana Barbosa

Mathematical models for exploring insecticide resistance in vector mosquitoes. University of Liverpool, UK (2012) pp.111.

José Teles

Stem cell fate regulation: computational modeling in the hematopoietic system. University of Lund, Sweden (2012) pp.230.

Liliana Salvador

Searching without information: a quantitative analysis of Caenorhabditis elegans locomotion. Universidade de Lisboa (2012) pp.182.

Jose Afonso Guerra Assunção

Evolutionary analysis of animal microRNAs. University of Cambridge, UK (2012) pp.183. [pdf]

Pedro Gonçalves

A neural circuit model of the oculomotor integrator: theory for optogenetic dissection . Ecole Normale Superieure, Paris, France (2012) pp..

Ana Paula Leite

Integrative approaches for systematic reconstruction of regulatory circuits in mammals . Massachusetts Institute of Technology (2012) pp..

Ana Vieira Cruz

An entropy-based investigation of underpinnings and impact of oscillations in a model of PD. University College London (2012) pp.169.

Paula Sofia De Sá Freire

Mathematical Modelling of Mitotic Exit Control in Budding Yeast Cell Cycle. University of Oxford (2012) pp.248. [pdf]

Inês de Santiago Domingos de Jesus

Interplay between polycomb repression and RNA polymerase II regulation genome-wide in murine ES cells. Imperial College London (2012) pp.281. [pdf]

Jose Cruz

Development of Evolutionary Models for Non-Coding RNAs. Université de Strasbourg (2011) pp.196. [pdf]

Nuno Miguel Dias Mendes

Efficient algorithms for the identification of miRNA motifs in DNA sequences. Universidade Técnica de Lisboa, Portugal & Université Claude Bernard, Lyon, France (2011) pp.110. [pdf]

Helio Pais

Computational approaches to uncovering regulatory roles of sRNA in animals. University of East Anglia, UK (2011) pp.171. [pdf]

Marcio Duarte Albasini Mourão

Reverse engineering the mechanisms and dynamical behaivor of complex biochemical pathways. School of Informatics and Computing. Indiana University (2011) pp.129. [pdf]

Luis de Figueiredo

Metabolic Pathway Analysis: from small to genome-scale networks. University of Jena (2011) pp.144. [pdf]

Sara Vieira da Silva

Genomic imprints of ecological adaptation in Bacteria and Archaea. Université Pierre et Marie Curie - Paris 6 (2010) pp..

Bruno Correia

Computational design with flexible backbone sampling for protein remodeling and scaffolding of complex binding sites. Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa (2010) pp.162. [pdf]

Pedro Monteiro

Towards an integrative approach for the modeling and formal verification of biological regulatory networks. Université Claude Bernard, Lyon 1, and Instituto Superior Técnico, Universidade Técnica de Lisboa (2010) pp.141. [pdf]